BtaEX0014436 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013926 | FCGRT
Description
Bos taurus Fc fragment of IgG, receptor, transporter, alpha (FCGRT), mRNA. [Source:RefSeq mRNA;Acc:NM_176657]
Coordinates
chr18:56420050-56421855:+
Coord C1 exon
chr18:56420050-56420319
Coord A exon
chr18:56420944-56421060
Coord C2 exon
chr18:56421374-56421855
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACAACATTGTCTGACTGCAGAAT
3' ss Score
6.77
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
AGCCACCCTCCATGCGCCTGAAGGCCCGACCCGGCAGTCCCGGCTTCTCTGTGCTCACCTGCAGCGCCTTCTCCTTCTACCCACCTGAGCTGAAGCTGCGCTTTCTGCGGAACGGGCTGGCCATTGGCTCTGGTGAGATAGACATGGGCCCCAACGGCGACGGCTCCTTCTACGCCTGGTCATCACTCACAGTCAAGAGTGGCGACGAGCACCACTACCGCTGCGTGGTGCAGCACGCGGGGCTGGCCCAGCCCCTCACGGTGGAGCTGG
Seq A exon
AATCACCAGCCAGGACCTCGGTGCCAGTGGTGGGGATCGTCATCGGCTTATTCCTGCTCCTGACAGTGGCTGCGGGAGGAGCTCTCCTGTGGAGAAGGATGAGGAAGGGGCTGCCAG
Seq C2 exon
CTCCTTGGATCTCTTTCCGTGGGGAGGATGTAGGGGCCCTCCTGCCCACTCCCGGCCTGTCCAAGGATGGTGAATCTTAGGATAAAAATGCATTCCCAGCAACTGCCGATCATCCCCCATCCTGGCTGTTACCAGCTAATGTCCTCAGGTCCTTTTCATGCTGTGAGACCTCCGGGAATCCTGGTATTTTTGAGCCTCCGGAAGGAGCCCGATGTCCTCCCTCTGGATTTCTCCTCCTGTGATCTGCCTCAGATCCCCCTCCTGATATATATGGTTCTTTTCCAGCTCCACATATAACATGGGTTTGGGCCCGAATCGTTGTGTTCTCATCGTTTCGACTTTTTTAGGGAATTGCGAGGGGGGATAAATGGTGTAAGCCTTGGGCTTCAAATCTCTCCTGAGGCTAACTTGTTGCCATGGTGGAATTTGCCAACTTTATATACCAAGTCATGTATTTTTAATGAATAAATTTCACAAATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013926_MULTIEX1-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.000 C2=0.302
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=86.8)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCTGTGCTCACCTGCAG
R:
TCCTCCCCACGGAAAGAGATC
Band lengths:
255-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development