MmuEX0018988 @ mm10
Exon Skipping
Gene
ENSMUSG00000003420 | Fcgrt
Description
Fc receptor, IgG, alpha chain transporter [Source:MGI Symbol;Acc:MGI:103017]
Coordinates
chr7:45092990-45095429:-
Coord C1 exon
chr7:45095160-45095429
Coord A exon
chr7:45093782-45093898
Coord C2 exon
chr7:45092990-45093355
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATGATACTTTCTGGCTGCAGATT
3' ss Score
7.97
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
AGCCGCCGTCTATGCGCCTGAAGGCCCGTCCTGGCAACTCTGGCTCCTCCGTGCTGACCTGTGCTGCTTTCTCCTTCTACCCACCGGAGCTCAAGTTCCGATTCCTGCGCAATGGGCTAGCCTCAGGCTCCGGGAATTGCAGCACTGGTCCCAATGGAGATGGCTCTTTCCACGCATGGTCATTGCTGGAGGTCAAACGTGGAGATGAGCACCATTATCAATGTCAAGTGGAGCATGAGGGGCTGGCACAGCCTCTCACTGTGGACCTAG
Seq A exon
ATTCATCAGCCAGATCTTCTGTGCCTGTGGTTGGAATCGTTCTTGGTTTATTGCTGGTGGTAGTGGCCATCGCAGGCGGTGTGCTGTTGTGGGGCAGGATGCGCAGCGGTCTGCCAG
Seq C2 exon
CCCCATGGCTTTCTCTCAGCGGCGATGACTCTGGTGACCTGTTGCCTGGTGGGAACTTGCCCCCAGAAGCTGAACCTCAAGGTGCAAATGCCTTTCCAGCCACTTCCTGATGCAGACTCGGGCCCCCTGCCCACTGCAGCCTTTCGGGCTGTGTGACCTCCTGAACTGTCTCCGAGCCTCCTGAGGGAGCCTGGGCCCGATGTCCTCCCATGGATCCCTGCTTTTGTGGCCTGCTTCAGTTTCCCTTCTTAATGTACATGGTTGTTTTCCATCTCCACATAAATTTGGCCCCAAATCTGTGTGTGCATCGTTATTCTCAAGTTTCAAGCAGCTGGAATAAATTGAACGCGTCTGGGAAAGATCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003420-'14-20,'14-17,18-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.187 A=0.000 C2=0.694
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=87.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGTCCCAATGGAGATG
R:
GAGTCTGCATCAGGAAGTGGC
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types