HsaEX0025407 @ hg38
Exon Skipping
Gene
ENSG00000104870 | FCGRT
Description
Fc fragment of IgG receptor and transporter [Source:HGNC Symbol;Acc:HGNC:3621]
Coordinates
chr19:49524507-49526333:+
Coord C1 exon
chr19:49524507-49524776
Coord A exon
chr19:49525457-49525573
Coord C2 exon
chr19:49526010-49526333
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACAGCGTTCTCTGGCTGCAGAAT
3' ss Score
7.43
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
AGCCCCCCTCCATGCGCCTGAAGGCCCGACCCAGCAGCCCTGGCTTTTCCGTGCTTACCTGCAGCGCCTTCTCCTTCTACCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTGGCCGCTGGCACCGGCCAGGGTGACTTCGGCCCCAACAGTGACGGATCCTTCCACGCCTCGTCGTCACTAACAGTCAAAAGTGGCGATGAGCACCACTACTGCTGCATTGTGCAGCACGCGGGGCTGGCGCAGCCCCTCAGGGTGGAGCTGG
Seq A exon
AATCTCCAGCCAAGTCCTCCGTGCTCGTGGTGGGAATCGTCATCGGTGTCTTGCTACTCACGGCAGCGGCTGTAGGAGGAGCTCTGTTGTGGAGAAGGATGAGGAGTGGGCTGCCAG
Seq C2 exon
CCCCTTGGATCTCCCTTCGTGGAGACGACACCGGGGTCCTCCTGCCCACCCCAGGGGAGGCCCAGGATGCTGATTTGAAGGATGTAAATGTGATTCCAGCCACCGCCTGACCATCCGCCATTCCGACTGCTAAAAGCGAATGTAGTCAGGCCCCTTTCATGCTGTGAGACCTCCTGGAACACTGGCATCTCTGAGCCTCCAGAAGGGGTTCTGGGCCTAGTTGTCCTCCCTCTGGAGCCCCGTCCTGTGGTCTGCCTCAGTTTCCCCTCCTAATACATATGGCTGTTTTCCACCTCGATAATATAACACGAGTTTGGGCCCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104870_MULTIEX1-9/9=8-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.186
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(3.4=3.3),PF0765410=C1-set=WD(100=87.9)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACCACTACTGCTGCATT
R:
CCAGTGTTCCAGGAGGTCTCA
Band lengths:
249-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development