RnoEX0035534 @ rn6
Exon Skipping
Gene
ENSRNOG00000020583 | Fcgrt
Description
Fc fragment of IgG receptor and transporter [Source:RGD Symbol;Acc:61811]
Coordinates
chr1:101086877-101088851:-
Coord C1 exon
chr1:101088582-101088851
Coord A exon
chr1:101087423-101087539
Coord C2 exon
chr1:101086877-101087233
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATGAGACTTTCTGGCTGCAGATT
3' ss Score
6.3
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
AGCCGCCATCTATGCGCCTGAAGGCCCGTCCTGGCAACTCTGGCTCCTCAGTACTGACCTGTGCTGCTTTCTCCTTCTACCCGCCGGAGCTCAAGTTTCGATTCCTGCGCAATGGGCTAGCCTCAGGCTCTGGGAATTGCAGCACTGGTCCCAATGGTGATGGATCTTTCCATGCATGGTCATTGCTAGAGGTCAAACGTGGAGATGAACACCATTACCAATGTCAAGTGGAGCATGAGGGGCTGGCCCAGCCTCTCACTGTGGACCTAG
Seq A exon
ATTCGCCCGCCAGATCTTCTGTGCCTGTGGTCGGAATCATTCTTGGTTTATTGCTGGTGGTAGTGGCCATCGCAGGGGGTGTGCTGCTATGGAACAGGATGCGAAGTGGGCTGCCAG
Seq C2 exon
CCCCATGGCTTTCTCTCAGTGGTGATGACTCTGGCGACCTATTGCCTGGTGGGAACTTGCCCCCGGAGGCTGAACCTCAAGGTGTAAATGCCTTTCCGGCCACTTCCTGATGCCAACCCAGGCCCCATACCCATTGCAGCCTGTGGGGCTGTGTGACCTCCTGAACTGTCTCTGAGCCTCCCGAGGGAGCCCTGGGCTGGATGTCCTCCTCGTGGATCCCTTCTTTTGTGGCCTGCTTCAGTTTCCCCTCTTAATGTCAATGGCTATTTCCATCTCCACATAAATTTGGGCCCAAATCTGTGTGTGCATCGTTATTCTCAGGTTTCAGGCAGCCGGAATAAATTGAACAAGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020583-'9-8,'9-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.000 C2=0.694
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=87.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGTCCCAATGGTGATGG
R:
CTGGGTTGGCATCAGGAAGTG
Band lengths:
249-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]