BtaEX0014793 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45506382-45509433:+
Coord C1 exon
chr19:45506382-45506519
Coord A exon
chr19:45506848-45506865
Coord C2 exon
chr19:45509325-45509433
Length
18 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCACGCGGCCTCCAGGTG
3' ss Score
7.71
5' ss Seq
CCGGTACGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GTACAATATGGAGACTACAGACAACGGGGCCCCAGGCTCCGAGAAGAGCAAGCCGCTGGAGCAGTCGGTGGAAGATCTGAGCAAGGGTCCGCCCTCATCCTTGCCGCCCCCGCCCAAGAGTCGCCACCTGACCATCAA
Seq A exon
GTGCCCCCCTTCTCCCCG
Seq C2 exon
GTTGACCCCGGCTCACAGCAAGAAGGCCCTGAGGAATTCCCGCATCGTCAGCCAGAAGGACGACGTCCACGTCTGCATCATGTGTCTGCGTGCCATCATGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=0.714 C2=0.099
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(6.8=21.3),PF063718=Drf_GBD=PU(3.8=6.4)
A:
NO
C2:
PF063718=Drf_GBD=PU(46.1=94.6)
Main Inclusion Isoform:
ENSBTAT00000034825fB2816
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGGTGGAAGATCTGAGCA
R:
AATTCCTCAGGGCCTTCTTGC
Band lengths:
114-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development