HsaEX0026028 @ hg19
Exon Skipping
Gene
ENSG00000184922 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:1212]
Coordinates
chr17:43311439-43313611:+
Coord C1 exon
chr17:43311439-43311567
Coord A exon
chr17:43312199-43312216
Coord C2 exon
chr17:43313503-43313611
Length
18 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCATGCGGCCTCCAGGTG
3' ss Score
7.7
5' ss Seq
CCGGTACGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GTATGACATGGAGAGCACAGACAACGGGGCTTCCAACTCAGAGAAAAACAAGCCCCTGGAGCAGTCTGTGGAAGACCTCAGCAAGGGTCCACCCTCCTCCGTGCCCAAAAGCCGCCACCTGACCATCAA
Seq A exon
GTGTCCCCCTTCTCCCCG
Seq C2 exon
GCTGACCCCAGCCCACAGCAGGAAGGCCCTGCGGAATTCCCGCATCGTCAGCCAGAAGGACGACGTCCACGTCTGTATTATGTGCCTACGCGCCATCATGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.795 A=0.429 C2=0.022
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(7.5=25.0),PF063718=Drf_GBD=PU(3.8=6.8)
A:
NO
C2:
PF063718=Drf_GBD=PU(45.3=91.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGCCGCCACCTGACCAT
R:
GGCGCGTAGGCACATAATACA
Band lengths:
117-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)