RnoEX0036388 @ rn6
Exon Skipping
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91265579-91268551:+
Coord C1 exon
chr10:91265579-91265704
Coord A exon
chr10:91265947-91265964
Coord C2 exon
chr10:91268443-91268551
Length
18 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTGTGCGGCCTCCAGGTG
3' ss Score
9.81
5' ss Seq
CCGGTACGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GTATGACATGGAAAGCACAGAAAATGTGGCCTCAGGCACAGAGAAGAACAAGCCCTTGGAACAGTCCGTGGAAGACCTCAGCAAGGCGCCACCCTCATCTGTGCCCAAAAGTCGCCTGACCATCAA
Seq A exon
GTGCCCCCCTTCTCCCCG
Seq C2 exon
GCTGACCCCCGCCCACAGCAGGAAGGCACTGAGGAATTCCCGGATTGTCAGCCAGAAGGACGACGTCCACGTGTGCATCATGTGTCTGAGAGCCATCATGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.566 A=0.286 C2=0.036
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(8.1=27.9)
A:
NO
C2:
PF0636711=Drf_FH3=PU(6.1=32.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGTCCGTGGAAGACCTCA
R:
CGGGAATTCCTCAGTGCCTTC
Band lengths:
109-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]