RnoINT0061629 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91265579-91268551:+
Coord C1 exon
chr10:91265579-91265704
Coord A exon
chr10:91265705-91268442
Coord C2 exon
chr10:91268443-91268551
Length
2738 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGC
5' ss Score
5.38
3' ss Seq
GCCTCTTCCACATCCACCAGGCT
3' ss Score
6.83
Exon sequences
Seq C1 exon
GTATGACATGGAAAGCACAGAAAATGTGGCCTCAGGCACAGAGAAGAACAAGCCCTTGGAACAGTCCGTGGAAGACCTCAGCAAGGCGCCACCCTCATCTGTGCCCAAAAGTCGCCTGACCATCAA
Seq A exon
GTATGCCGGGCCCGGATGGGGTGACAGGGGAATGAGGAACAGAGACCCCCACTGCCACATCTAAACAGGGCCCTGAGGGTCGGTGGGAGATGTAGTTCAGCATGGGGAATCAGATGTGTAAAGTTTTCAGAGAGACCAGAGGCTAGAACCTGAGGGGAACTGGAAGAAGGCGGGGGTCTGGGGGTTGGCAGGATCCCTTTTGTACCTCTCTAACCCCTTGTTTCTCCCTGTGCGGCCTCCAGGTGCCCCCCTTCTCCCCGGTACGTACATAGTCACCTGGGGGCAGGGGCATGCTGGGGGTAGGTGCATGCTGGGTCCTGTCTGTGGGTGGTGTGGGTTGGAAGAGCAGTCAGCTGACACTCGAGTTCAGTTGTTGTGGCTTGGTCTCCTCATTCTGACAAAAGACATCTTGCCATCTTGTGGGGATGCAGGGGCGGGGAGAAGGAGACAACCCTGGAGCATCAGCTTCCTCTCTTGGGTCTGAGAGATCAAATATATGTTTATTTATTTGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTATAGTGTACAGGCGTGTGTGTGTGCCAATAGCATGGCTTTTACCTGGGTGCTGGGGGTTTGAACTCAGTTCCTCAGGGTTACACAGTAAACGATCTTACCAATTGGCCATCTTCACAGCCATATATGTGAACATACATATAAATATATATGTAAATATCTATTTACACACACACACACACACACATATATGGTACTAGGACTTGAGTCCAGGGCTTCAGGCATTCTAGACAAGTACTCCCCCTAGCCTGGAACAACTGTATATTAAGCCCTAAGACCTCACAATATGTCTCTTTCCTTCTTCATTCATTCACATAGCAAACAGTTTTTTAGATACTTACTAAATAGCACATATTAGTGGCATGTGCCCACAAGACAGATAATTCTGTTTTCGGGGGGCCTCAGTCTAGTGGGAAGACAATTTAGTGTGATACATAATCACAGAGAAGCAACCTGGATCTCTGAGAAGGGAGGTGCCCACTTCTTGAGGCGGGGGAAGGGGAGCAGTGGGGGGTTAGGGTGGGAGGACCAGGAAGACTTCCCAAAGGAGGTGACATCGGAACAGTGTCTGACAAGCGACAAGCTTGTGGTAGGCAAGCGATGGGGGCAAGGAGAGGCAGCACGAACAACGCCTGAGACATATTTAAACAGTCTAGGAAAGGCTGAGGTAGCAAACAGCCGGGAGGGCTCAGTTGACAAGGTGGTGCTGGCCAGCGTGGCGGGAAGAGTTACAGAAGATTGTCAAGCAGATTGTCAGGTGGAATATTTGGTTGGCGGCTCGCCAAAAATGAAAACCTCAAATAATTTTCGGGTGTGTGTGTGTGGGGGGGAATAATAGAGCGAATACTCTTAGAATACTTCCTAGGCGCCAGGCTGGATTATTATGTAATCCCAACTAGCCTGTGATGAAGGCGTTCCTGAAACCGAGGAAATGGCCCAGTTAGAAAACGCTTGCCTTGCAAGCGTGAAGACCCGAGTTCAGTCCCTGGCACCCGTGTAAAAAGTTGGCTACACTGGAGAGGCAGAGAGAAGATCCCTGGCACTCGGTGGCCAGACAACCTAGCCTCATCGGCGGGTCACGGGTCCCAGTGAGAGATCTTGTCTCAAAAGAACAGATTGGGGGCTGAGGAGACTGCTTGGTGGGTAAAGTGCTTCTGCATACGCGTGTGGACCTGAGTTCGGATCTCTAGCGCCCAGGTAAAAATTGGGCACAGCTGCGTGCACCTGGCTCCTCAGGTTTCGAAAACGAGTAAAGACCGGTAAAGGAAGGTCCGTCAAAAGACTCTGGCCTTCACACGCACACATACACACTCAGATGCACACATGGGTGCGGAAGCCACACACACACACAACAGCAAACAAGGTAGGAAGCGTCCGAAGAATGATTCTTAAGCTTGTCTGGTCTGCATGTGCACGTGCACACAGGCACACACACCCACACCCCTGCACACACTCGGAATGTGCATATGTGTACATACAAAGACAGTATCTGTTATTGCTGGGTATGGTGATATATACCTGTAAAAGAGGCCGGCCTGGCTCCGTGAGACTTTGTCTCATCCCCCCCCCCGCCCCAGCTCCCCCAATAAGGAACTAATGTGGCCATTCGCTTTACTAAAGTAGTAAGCTGGAATGTTCATGAATTTTGAGTTTAGTCGGCCTCTCAAGAGGGAAGATGAGTTCAAAGTGATCGTGAGCGCCACCTTGTGGCGACATTACTGTTGTCTGGCTGGTTCCAAACTGTTCATCTTTATCCTTGGTGGGCTATCCACTCACAAGCTCCTCCCCCCCACCTTCTTTACTATCTGTCTCCTTCCCTCCCTCCCTCCTTTCTTTTTTGAGACAGGCTCTCATGTGACCGAGGTCTCAGACTCCCTACTATGTAGCCAGGGCTGGTTTTGAGCTTCAGTCCTCTGCCTTTACTTCCCAAATACTGGATTACAGGCATGTGCCATTTTGTACCTGGCTCACAGTAGCCCTCTCAAAAACCAGGTCTTTGTAAGGGCCTTTTCTTCCTTGACCCACCCTCACTACCTCCCCCAGCATGCCCGCCCCTGGACAGGAGACAGCGACTTAGAGTTCCAGATCTATCCCCCTCACTCCAAAAGGCATCTTATTGGTATGGAGAACAAGAAGCTGGGGATTAGGGGGTCTGACCCTGCTGCCTCTTCCACATCCACCAG
Seq C2 exon
GCTGACCCCCGCCCACAGCAGGAAGGCACTGAGGAATTCCCGGATTGTCAGCCAGAAGGACGACGTCCACGTGTGCATCATGTGTCTGAGAGCCATCATGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.566 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(8.1=27.9)
A:
NA
C2:
PF0636711=Drf_FH3=PU(6.1=32.4)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]