MmuINT0065098 @ mm10
Intron Retention
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103182642-103185729:+
Coord C1 exon
chr11:103182642-103182767
Coord A exon
chr11:103182768-103185620
Coord C2 exon
chr11:103185621-103185729
Length
2853 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGC
5' ss Score
5.38
3' ss Seq
GCCTCTTCCTCATCCACCAGGCT
3' ss Score
8.66
Exon sequences
Seq C1 exon
ATATGACATGGAAAGCACAGACAGTGTGGCCTCTGGTGCAGAGAAGAGCAAGCCCCTGGACCAGTCTGTGGAAGACCTCAGCAAGGCACCTCCCTCATCTGTGCCCAAAAGTCGCCTGACCATCAA
Seq A exon
GTATGCAGGGCCCTAGATGGGTTGATAGGGGAATGGAGAACAGAGACCCCCGTTGCCACATGTAAACAGGGCCCTGAGGGTTGGCGGGAGGTGTAGTTCAGTATGGGGGAATCAGATGTGTTGAGTTTTCAGCTGGAGACACCAGAGGCTAGAATCTGAGGGGGACTGGAATAAGGAGGGGGTTTGGGGGCTGGTAGGACCCCTTTTGTACCTCTCTAACCCCTTGTTTCTCCCTGTGTGGCCTCCAGGTGCCCCCCTTCTCCCCGGTACGTACATAGGCACCTGGGGGCAGGTGCATGCTGGGGGTAGGTGCATGCTGAGGGCAGGTGCATGCTGGGTCCACTCTGTGGGTGGTGGGTTGGAAGAGCAGTCAGCTGACACTCCTGAGTTCAGGTACTGTGGACCAATCTCCTCATCCTGACATAGGATATCTTGCCATCTTGTTGGGATGCAGGGAGAGAGAAGGAGATAACCCTGGAGCATCAGTTTCCTCTGTTGGGTCTGAGGGACCAAATATATGTTTATTTACTTGTGTGTATATATGTGTAGTATGGTATATGGGCATGTGTGTGTGTGCCAATAGCTGATCAAGAAAAGCATGGCTTTTACTTGGGTGCTGAGGATTTGAACTCAGGTCTTCATGCTTACATAGCAAATGATCTTACCAACTGGCCATCCCCACAGCCATTCATTCATATATATATATATATATATATATATATGTGTATATATATATATATATATATACACACACATACATATATACATATACATATATGTATATATATGCATATAAACATACATATAAATATACATGTAAATGCATACACACACACACACTGTGTGTGTGTGTGTGTGTGTGTGTATAAGTGTGTATGTATGGCATTGGGACTTGAGTCCAGGGCTTCAGGCATTATAGGCAAGTACTCTTCCACTGAGCTACACCCCCTAGCCTTATTAAGCCCCAAGACCTTGCAATATCTTTCTTTCTTTCTTTCTTTTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTTCCTTCCTTCCTTTCTTTCTTTCTTTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCATTTACATAGCAATCAGTTTTTCCGACACTTACTAAATAGCACATATTAGTGGCAAGTGCCCACAAGACAGGTAAATTCTGCTTTTGGGGACCTCAGTCTAGTGGGAAGTCAATTTACTGTGATAGATCATCGCAGAGCTGTGACCTGGATTTCTGAGAAGGGAGGTGCCCATTTCTTGGAGGGGGGGGGGGCTACCAGGAAGACTTTCCAGAGGAGGTGACACTGGAACTATGTCTGACAAGTGACACACTTGTGATAGGCAAGTGATGGGACAGAGGGGCAGCATGAACAAAGACTGAGACACATTTGAGCAATCTAGGAAAGGCTGATGTGGCAAAGCAGCCACGAGGGCCCAGTGGGAGAGGTGCGGCTGGCCAGTGTGGCAGGAAGAGTTACAGAACTGTCCAGAGGATGATGTGGAAGATATGGTTAGCAGCTCTCCAAAAATGAAAATCTCAAATAAGTTTTTGGGGGAGGGGGGTCAAGAAAATAGAATACCCAGTATGCTCCATACTAGGTGTCAGGCTGGAGCTAATCACATGATCCAAACTAGCCTGTGAAGAAGGTGTTCCTGAAGCTGAGGAAATGGCCCAGTTAGAAGACGCTTGCCTTGCGAAGCCCCGAGTTCAGTCCCCAGCACCCAAGTAAAGAGTTGGTTACAGTGGTTGTGTGCTTATAATCCCAGCACTGGAGAGGCAGACAGGAGATCCCTGGCAGCCGACCCTCACTGGTGGGTCCCAGGTCCCAGTGAGAGATCTTGTTTCAAAAGAACAGATTGGGGGCCGAGGAGACTGCTTGGTGGGTAAAGTGCTTCTGTGTCAGAGTGCAGGCCTGAGTTTGGGTCTCTAGCGCCCATGTAAAAATTGGGCACAGCGGCATGTACCTGGGTCCTCAGTACTGGGGAGATAGGAGGATAGCTGGGGCTTGGTGGCTTGCATATACAAAGGTGGTATCTACTATTGCTGGGTATGGTGATATATAGCTGTAAAGGAGGCCAGCCTGGGCTACATGAGACTCTGCCTCATTCACCCGACTCCCCCAATATGGAACTACTGTTGCCATTCACTTTACTGAAGTAGTAAGCTGGAATGTTCTTGAATCTAGGCACTTTGAGTTTAGTGTGCCTCTCAAGATGGAAGATGAGGCTGAGTGATTGTGAGCACCACCTTGTGGCGACATTACTGTTGTCTGGCTATTTCCAGGCTTGGTCCATCTATCCCTGGTGGGCTTTCCACTTGCAAGCTCTCCTCCTTCCTTCTCTCCCTCTCTACTTCCTGTCTCCCTCCCTCCTTTCCTTTTTGAGACAGGCTCTCATATAACCTAGCTCTCAAACTCCCTACTATGTAGCCCAGGCTGGTTTTGAGTTCCAGTCCTCTGCCCTTACTTCCCAAATACTGGAATTACAGGCATGTGCCATTGTGCCTGGCTCACAGCAGCCCTTTTAAAAAACCAAGTAATTTTAAGGGCCTTTGCTTCCTTGGCCCACCCTCACTCCCTCCCCCAGCATGCCTGCCCCTGGGGAAGGCAGCCTTCAGCTGGCCAGCTGAGTCAGGTAGATAGGAGACAGCAGCTTAGAGTTCCTAGATCGATCCCCCTCACTCCAAAAGGCATCTTACTGGTATGAGGAGCAGGAAGCTGGGGGTTGTGGGGAGGGTGTCTGACCCTGCTGCCTCTTCCTCATCCACCAG
Seq C2 exon
GCTGACCCCTGCCCACAGCAGGAAGGCGCTGAGGAATTCCCGAATCGTCAGCCAGAAGGATGATGTCCACGTGTGCATCATGTGTCTAAGAGCCATCATGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805:ENSMUST00000042286:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.523 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(6.8=23.3),PF063718=Drf_GBD=PU(6.1=11.6)
A:
NA
C2:
PF063718=Drf_GBD=PU(45.3=91.9)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types