BtaINT0063167 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45506382-45509433:+
Coord C1 exon
chr19:45506382-45506519
Coord A exon
chr19:45506520-45509324
Coord C2 exon
chr19:45509325-45509433
Length
2805 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CCTCCTCCCCACCCACCCAGGTT
3' ss Score
8.1
Exon sequences
Seq C1 exon
GTACAATATGGAGACTACAGACAACGGGGCCCCAGGCTCCGAGAAGAGCAAGCCGCTGGAGCAGTCGGTGGAAGATCTGAGCAAGGGTCCGCCCTCATCCTTGCCGCCCCCGCCCAAGAGTCGCCACCTGACCATCAA
Seq A exon
GTAAGTGGGCCCCCCCCACCCCCCACCCCGCCTCGGGTGGGGTGGCAGGGGGCGGGGTGAATGGAGATTTCACCCCTGACCGCTGTACTCAGCCTGCTCCGCTGTACTTACCTGGGCCCTGGGGGTGGTGGGAGGACTGCCTGGCATCGGCGATCAGAGTAAGGGCCTCACACAGGGCTCAGGAGATGGGTGTTTTAAGAAGCCTTTGGGGTGAGCACTTAGAGGCTGGAACTTGAGGGGGGGGTCTGGGATAAGGAGGGGGTTTCTGGGTCAGGGGGATCCCTCTTGTATTCATCTAACCCCCTGTTTTCTCCCACGCGGCCTCCAGGTGCCCCCCTTCTCCCCGGTACGTAGCTGCCTAGGGGCTGGTGCATGCCTGGTCAGCTCCTAGGGTGGTGGTGGGATTGGGTGAGGTGTTCAACTCAGGTGACACCCCTGGATTCAGCTGCTTCAGATACATCAGCCTACCCTAACTTAAGACATCCAGCTGGGAGGGCAGGAGAGGGGAGATGGCCCTGAACCCTCGTGTGGACCCCGGGTGCCTCCCTTCCCTCTCTGGGACAGGAAACCAACTTCGTCTTAAGACCCAAACTCTCACAATATATTTCTTTCTTTCTTCTTCTTTTTAAAAATTTTTATTTATTTGGCTGTGGCAGGTCTTAGTTATAGCATGTGGGATCTAGTTCCCTGACCAGGAGTTGAACCCAGGCCCCTTGCATTAGGAACACAGAGTCTCAACCACTGGACCAGCAAGGAAGTCCACCCCTGCTCCCCAATTTTTTATTTTTAATAGCTTTTATTTATTTATTTTTGGCTGTGCTGGGTCTTTGTTGCTGCATGGGCTTTTCTCTGGTTGATGGGAATTGGTGCTATTCTTCGCTGCAGTGTGGGGTTCTCATTGCAGTGGCGTCTCTTGTTGCAGAGCACGGACTCTGGGGCTCTTGGGGTCAGTAGTTGTTGACTCCTGGGCTCTAGAGCACAGGTTCAATAGTTGTAGCACTGTGGCTTAGTTGCTCCACAGCACGTGGGATCTTCCCAGACCAGAGATCGAACTCAAGTCTCCTTTGTCTCTTGCACTGGCAGGCAGATGATTCTTTACCACTGAGCCACTAGGGAAGCCCTCCCCAGTTTCTTTGTTCATTCATTCATTCAACAAACATTTTTTTAGCATTTACTATGTACCAGGCATGGTGGGAGGTGCTCAGGTGACAGATGACACTGCCCTTGGGAGCCTTCCATCTAGTAGGGGACAGTGTGTGATAGGCTGTCATGGAGGTACGACTGTGAACTCTAAGTAGGGAAGTGGCCACTGCCTGGGCCATGAGGAAGGCATCCCAGAAGAGATGACACTGGAACTGTGTCGTGCAGGCTTTCCAGGCAGTGGTGGGCATGGGGAAGGGGATTCCAGGCAGAAGGAATAGCATGAGCAAAGACTCAGAGGCATTTGAGCGGTGACGGGAATGTGGCAGGCAGAGGGAGGAGTGGGGTCTCCCAGATGTTGGAAATGGGATAGAATTGTCCTGAGGACCCAATGTGGAAGTTTGGTGGTTGTGACAAGGGAAAAAAATTACCTCTTATCAAAGAAATCAGTGAGCACATTCATATAGCACTTATTTTGTGCCAGGCACTGTTCTAAACTCATTTCATAGACCCAATAACCTTATCAGGAAGGTGCTGTTATTACCATTATTATTTTACAAAAGAGGAAACAGGCCCATGGAGATTAAGTAATTTACCTTGCAAACCCTGAGCTGGGATTTGACCCAAGACAGTCTGAATTCGCAAGATGGAAGATAAACCCTTTGTGGCTATGAGCGCCACCTTGTGGAGATCATTTTCATTGCAGTTTACAAGCTTTGGAGGTCCTTGCCTTCTATAAGCTCTCCATAGAATCCCAGGGGCAGGAGAGCCTGGTGGGCTGACGTCTATGGGGTCACACAGAGTCGGACACGACTGAAGTGACTTAGCAGCAGCAGCATGATAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCGGGGTCTGTTGGGAAAGGAGGCTTCAGGGCTCTAGGTCCCTTACCACCAAAACAGCTTCACAGATTTCTCTGAAGATTTTCTGCTAACAACAGTTTGAAGGTTTAGATTAAGTAATAAATTTTAAAATGTAACTTTTGAGCACCTGAAGGTAGAGGAAAGCCACTTTAAAATTTTCTTTAGATAGGATTTATAGGTAATCTCGGAGAAGGCAATGGCAACCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTTGCTAAGAGTTGGATAGGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGGAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGAGGCAGCCTGGTGGGCTGCCGTCTATGGGGTCACACAGAGTTGGACGTGACTGAAGTGACTTAGTAGTAGTAGTATGATACAGCAACTCTTTTTAATGCCACCAAGTCACTGTTAGGAGTCTATTTCCCTGACTCTCCCCTTAAACTGCCCCCAAAATACCAAGTGCCAGGCCTAAGGACTGAGGAGGACTTCCTGCCCTCAGCCAGCCTCTTTGGTTGGGTGGGCAGGAAGCCATCTGAGTGGTGGGGGAACAGGAAGGGTTTGGGATTCTGACCCTTGCTGCCTCCTCCCCACCCACCCAG
Seq C2 exon
GTTGACCCCGGCTCACAGCAAGAAGGCCCTGAGGAATTCCCGCATCGTCAGCCAGAAGGACGACGTCCACGTCTGCATCATGTGTCTGCGTGCCATCATGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=NA C2=0.099
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(6.8=21.3),PF063718=Drf_GBD=PU(3.8=6.4)
A:
NA
C2:
PF063718=Drf_GBD=PU(46.1=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development