MmuEX0019388 @ mm9
Exon Skipping
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103043956-103047043:+
Coord C1 exon
chr11:103043956-103044081
Coord A exon
chr11:103044330-103044347
Coord C2 exon
chr11:103046935-103047043
Length
18 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTGTGTGGCCTCCAGGTG
3' ss Score
11.26
5' ss Seq
CCGGTACGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ATATGACATGGAAAGCACAGACAGTGTGGCCTCTGGTGCAGAGAAGAGCAAGCCCCTGGACCAGTCTGTGGAAGACCTCAGCAAGGCACCTCCCTCATCTGTGCCCAAAAGTCGCCTGACCATCAA
Seq A exon
GTGCCCCCCTTCTCCCCG
Seq C2 exon
GCTGACCCCTGCCCACAGCAGGAAGGCGCTGAGGAATTCCCGAATCGTCAGCCAGAAGGATGATGTCCACGTGTGCATCATGTGTCTAAGAGCCATCATGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805-'6-8,'6-6,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.502 A=0.286 C2=0.011
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(6.8=23.3),PF063718=Drf_GBD=PU(6.1=11.6)
A:
NO
C2:
PF063718=Drf_GBD=PU(45.3=91.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAAGTCGCCTGACCATCA
R:
GACACATGATGCACACGTGGA
Band lengths:
108-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types