BtaEX0014845 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50097517-50105003:-
Coord C1 exon
chr3:50104845-50105003
Coord A exon
chr3:50100104-50100118
Coord C2 exon
chr3:50097517-50097626
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTTTCCATTGAACTATTCAGTGG
3' ss Score
3.7
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
CCACAATCCCCACCCTTAACCCCTACTAGTTTATTCACATCCAGTACTCCTAATGGGTCCCAGTTTCTCACATTCTCCATTGAGCCCGTGCATTATTGTATGAATGAAATAAAAACAGGGAAGCCCAGAATTCCTTCTTTCAGAAGTCTCAAAAGAGGG
Seq A exon
TGGTCGGTGAAGATG
Seq C2 exon
GGCCCAGCACTAGAAGATTTCAGTCATCTGCCACCAGAACAGAGACGTAAAAAACTGCAGCAGCGCATTGATGAACTTAACAGAGAACTACAGAAAGAATCAGATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383_MULTIEX1-9/9=8-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=0.000 C2=0.973
Domain overlap (PFAM):
C1:
PF103924=COG5=PU(7.1=13.2),PF127872=EcsC=PU(2.7=5.7)
A:
NO
C2:
PF103924=COG5=FE(36.4=100),PF127872=EcsC=FE(32.1=100),PF143891=Lzipper-MIP1=PU(34.1=78.4),PF0218511=HR1=PU(25.0=43.2)
Main Inclusion Isoform:
ENSBTAT00000005756fB2830
Main Skipping Isoform:
ENSBTAT00000005756fB2829
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGCCCAGAATTCCTTCT
R:
CAATGCGCTGCTGCAGTTTTT
Band lengths:
112-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development