BtaEX0014844 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50097517-50106635:-
Coord C1 exon
chr3:50106432-50106635
Coord A exon
chr3:50104845-50105003
Coord C2 exon
chr3:50097517-50097626
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTATTTCCATATTAGCCA
3' ss Score
5.04
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACTCTCAGATGGTAGTAGACTCCTTTAAGTCTGGATTTGAACCTCCCGGAGACTTTCCATTTGAAGATTACAGTCAGCATATTTATAGAACCATTTCTGATGGGACTATCAGTGCATCCAAACAAGAAAGTGGAAAGGTGGATGCCAAAACCACAGTAGGAAAGGCCAAGGGCAAGTTGTGGCTCTTTGGAAAGAAGCCAAAG
Seq A exon
CCACAATCCCCACCCTTAACCCCTACTAGTTTATTCACATCCAGTACTCCTAATGGGTCCCAGTTTCTCACATTCTCCATTGAGCCCGTGCATTATTGTATGAATGAAATAAAAACAGGGAAGCCCAGAATTCCTTCTTTCAGAAGTCTCAAAAGAGGG
Seq C2 exon
GGCCCAGCACTAGAAGATTTCAGTCATCTGCCACCAGAACAGAGACGTAAAAAACTGCAGCAGCGCATTGATGAACTTAACAGAGAACTACAGAAAGAATCAGATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383_MULTIEX1-8/9=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.434 C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
PF103924=COG5=PU(7.1=13.2),PF127872=EcsC=PU(2.7=5.7)
C2:
PF103924=COG5=FE(36.4=100),PF127872=EcsC=FE(32.1=100),PF143891=Lzipper-MIP1=PU(34.1=78.4),PF0218511=HR1=PU(25.0=43.2)
Main Inclusion Isoform:
ENSBTAT00000005756fB2829
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTTGAACCTCCCGGAGA
R:
CAATGCGCTGCTGCAGTTTTT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development