GgaEX0008252 @ galGal3
Exon Skipping
Gene
ENSGALG00000005850 | FNBP1L
Description
NA
Coordinates
chr8:14570211-14575901:-
Coord C1 exon
chr8:14575698-14575901
Coord A exon
chr8:14573176-14573334
Coord C2 exon
chr8:14570211-14570225
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTATTTCCACATTAGCCA
3' ss Score
3.58
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACTCCCAGCTAGTGATAGACTGCTTCAAATCTGGTTTTGAACCTCCTGGAGATTTTCCATTTGAAGACTACAGTCAGAATATTTACCGGACTATCTCTGATGGAACCATCAGTACACCAAAGCAGGAAGGAATGAGAATTGATTCAAAAACTACAGTGGGCAAGGCGAAAGGAAAGCTGTGGCTATTCGGAAAAAAGCCAAAG
Seq A exon
CCACAGTCCCCACCCCTAACCCCTACTAGTTTATACACATCCAGTACTCCTAATGGGTCCCAGTATCCCATATTCTCCATTGAACCAGTGCATTATTGCATGAGTGACATAAAAACAGGGAAGCCCAGAATTCCTTCTTTCAGAAGCCTCAAAAGAGGG
Seq C2 exon
TGGTCGGTGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850-'14-19,'14-18,15-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.235 A=0.415 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event