HsaEX0026124 @ hg19
Exon Skipping
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:20851]
Coordinates
chr1:94000262-94009773:+
Coord C1 exon
chr1:94000262-94000465
Coord A exon
chr1:94001889-94002059
Coord C2 exon
chr1:94009664-94009773
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTATTTCCATATTAGCCA
3' ss Score
5.04
5' ss Seq
ATAATGGGT
5' ss Score
-7.33
Exon sequences
Seq C1 exon
GACTCTCAAATGGTGGTAGACTCCTTCAAATCTGGTTTTGAACCTCCAGGAGACTTTCCATTTGAAGATTACAGTCAACATATATATAGAACCATTTCTGATGGGACTATCAGTGCATCCAAACAGGAGAGTGGGAAGATGGATGCCAAAACCACAGTAGGAAAGGCCAAGGGCAAATTGTGGCTCTTTGGAAAGAAGCCAAAG
Seq A exon
CCACAGTCCCCACCCTTAACCCCTACTAGTTTATTCACATCCAGTACTCCTAATGGGTCCCAGTTTCTCACATTCTCCATTGAGCCCGTGCATTATTGTATGAATGAAATAAAAACAGGGAAGCCCAGAATTCCTTCTTTCAGAAGCCTCAAAAGAGGGGTAAGTTTAATA
Seq C2 exon
GGCCCAGCACTAGAAGATTTCAGTCATCTGCCACCAGAACAGAGACGTAAAAAACTACAGCAGCGCATTGATGAACTTAACAGAGAACTACAGAAAGAATCAGACCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.292 A=0.321 C2=0.954
Domain overlap (PFAM):
C1:
PF127872=EcsC=PU(16.8=32.4)
A:
PF103924=COG5=PU(7.1=13.2)
C2:
PF127872=EcsC=FE(27.5=100),PF103924=COG5=PU(36.8=86.5),PF143891=Lzipper-MIP1=PU(34.1=78.4),PF154561=Uds1=PU(36.8=86.5),PF0218511=HR1=PU(25.0=43.2)
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCAAATGGTGGTAGACTCCT
R:
TACGTCTCTGTTCTGGTGGCA
Band lengths:
252-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)