MmuEX0019451 @ mm9
Exon Skipping
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122252074-122261024:-
Coord C1 exon
chr3:122260821-122261024
Coord A exon
chr3:122255054-122255068
Coord C2 exon
chr3:122252074-122252183
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTTTCCATTGAACTATTCAGTGG
3' ss Score
3.7
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GATTCTCAAATGGTAGTAGACTCCTTCAAGTCTGGCTTTGAACCTCCAGGAGACTTTCCATTTGAAGATTACAGTCAGCACATTTACAGAACCATTTCTGACGGGACCATCAGTGCAGCCAAACAGGAGAGTGGCAAGATGGATTCCAAGTCCACAGTGGGGAAGGCCAAGGGCAAGCTGTGGCTCTTTGGAAAGAAGCCAAAG
Seq A exon
TGGTCGATGAAGATG
Seq C2 exon
GGCCCAGCACTAGAAGATTTCAGTCATTTGCCACCAGAGCAGAGGCGGAAGAAGTTACAGCAGCGCATTGACGAGCTTAACCGAGGGCTGCAGAAGGAAGCAGACCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.279 A=0.000 C2=0.939
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF143891=Lzipper-MIP1=PU(34.1=78.4),PF154561=Uds1=PU(36.8=86.5),PF0218511=HR1=PU(25.0=43.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCAAGTCCACAGTGGGGA
R:
CTGCTCTGGTGGCAAATGACT
Band lengths:
104-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types