RnoEX0036530 @ rn6
Exon Skipping
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226698916-226706308:-
Coord C1 exon
chr2:226706150-226706308
Coord A exon
chr2:226701783-226701797
Coord C2 exon
chr2:226698916-226699025
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTTTCCATTGAACTATTCAGTGG
3' ss Score
3.7
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
CCACAGTCCCCACCCTTAACCCCTACTAGTTTATTCACATCCAGTCCTCCTAATGGGTCCCAGTTTCTCACACTCTCCATTGAGCCCGTGCATTATTGTATGAATGAAATAAAAACAGGGAAGCCCAGAATTCCTTCTTTCAGAAGCCTCAAAAGAGGG
Seq A exon
TGGTCGATGAAGATG
Seq C2 exon
GGCCCAGCACTAGAAGATTTCAGTCATTTGCCACCAGAGCAGAGGCGTAAGAAGTTACAGCAACGGATTGATGAGCTTAACCGAGGGCTGCAGAAAGAATCAGACCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798-'19-17,'19-16,20-17
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=0.000 C2=0.955
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF143891=Lzipper-MIP1=PU(34.1=78.4),PF0218511=HR1=PU(25.0=43.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATTGAGCCCGTGCATTA
R:
TGAAATCTTCTAGTGCTGGGCC
Band lengths:
107-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]