BtaEX0016164 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021636 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:22359363-22369183:+
Coord C1 exon
chr2:22359363-22359828
Coord A exon
chr2:22366796-22367195
Coord C2 exon
chr2:22369018-22369183
Length
400 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTTGCATTTTGCAGTTG
3' ss Score
7.38
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATGAATTCTTTTTCCGATATACCTGCCAAGAACTTAACCTTTGCAGTCAATATGACCAAGACTTTGTCTTCACCAGTTACACATGGATTTAATTCCACTAATGACCCACCTTCAATGTCAATAACAAGGCTTTTTCCAGCCTTACTAGAATGCTTTGGCATAGTCCTTTGTGGCTACATAGCAGGAAGGGCCAATGTTATAACATCAACACAAGCAAAAGGACTGGGAAATTTTGTCTCCAGATTTGCACTTCCAGCTTTACTATTCAAAAACATGGTCGTACTTAATTTTTCTAATGTGGATTGGTCTTTTCTATACAGTATCTTAATTGCCAAAGCTTCTGTATTTTTCGTTGTATGTATATTAACGTTACTGGTTGCCAGTCCCGATAGTCGATTTAGCAAAGCCGGACTATTTCCTATTTTTGCTACACAAAGTAATGACTTTGCATTGGGATATCCTATAG
Seq A exon
TTGAAGCTTTATATCAAACAACATACCCAGAATATCTCCAGTACATTTACTTAGTGGCACCAATATCTCTGATGATGTTAAACCCTATAGGATTTATCTTCTGTGAAATTCAGAAATGGAAAGACACTCAGAATGCTTCTCAAAACAAAGTGAAAATTTTGGGACTTGGACTCTTGCGTGTGTTACAGAACCCAATAGTATTTATGGTCTTCATTGGCATTGCCTTCAATTTTATTCTTGATCAAAAGGTGCCTGAATATATGGAAAATTTTCTTGATGGACTTGCAAATTCTTTTTCTGGATCAGCTCTATTTTATCTTGGTCTTACAATGGTAGGAAAAATAAAGAAACTAAAGAAGTCAGCATTTGTTGTACTCATTCTTCTCATCACAGCTAAACT
Seq C2 exon
CCTGGTGCTGCCACTTCTATGCAGAGAAATGGTGGAACTCTTGGACAAGGACGACAGTGTAGTAAACCACACAAGTTTGTCAAATTACGCGTTTTTGTATGGTGTCTTTCCTGTAGCACCAGGAGTGGCTATCTTTGCAACACAGTTCAACATGGAAGTAGAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021636_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PU(68.7=71.8)
A:
PF0354713=Mem_trans=PD(30.7=37.3),PF0354713=Mem_trans=PU(56.3=73.1)
C2:
PF0354713=Mem_trans=FE(31.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAGCAGGAAGGGCCAATGT
R:
ACACTGTCGTCCTTGTCCAAG
Band lengths:
350-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development