DreEX0035812 @ danRer10
Exon Skipping
Gene
ENSDARG00000090804 | gpr155a
Description
G protein-coupled receptor 155a [Source:ZFIN;Acc:ZDB-GENE-100922-89]
Coordinates
chr9:2476240-2482921:+
Coord C1 exon
chr9:2476240-2476691
Coord A exon
chr9:2479309-2479708
Coord C2 exon
chr9:2482753-2482921
Length
400 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTGTTTTTCCACAGTGG
3' ss Score
10.77
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
TTACTTCCTGATTGCAGTAAAGCTCAGGATGGAGGATCTGTTGGGGAACGTCTCCGTCTCCAGCAGGGATGAATCTGGCGCTCCGACCGTCCCGCCTAGCATGTCCATCGACAAACTCCTCCCGGCCCTGCTCGAATGTTTCGGGATAATTCTCTGCGGATATGTGGCGGGACGCACCAACATCATCCTGGCGACTCAAGCTAAAGGACTGGGCAGTTTTGTGTCCAAGTTTGCTCTTCCGGCTCTGCTTTTCAAAAACATGGTGTTGCTGGACTTTGGGGACGTGATCTGGCCCTTTTTCTTTAGTATCCTGGTGGCCAAAGTGACCGTTTTCTTTTTCGTATGTGTATTAACGCTCTTGGTGGGGAATCGAGAGAGCCGTTACTCCAAAGCTGGCCTGTTCCCCATTTTTGCAACGCAGAGTAATGACTTTGCTCTTGGATTCCCTATTG
Seq A exon
TGGAGGCGTTATACCGCAGCACACACCCCGAGTACCTGCAGTACATCTACCTGGTGGCTCCAGTCTCCCTCATGGTCTTAAACCCACTGGGCTTCATGTTCTGTGAGGTTCAGCGGAGGAAAAACGGAGAACCCAGCCAGCAGAGCAAACTGCACGTGCTGGGTCTGGTGGTCCTGCAGGTGTTCAAGAACCCCATCGTCTTCATGGTGATGATCGGGCTCGTGTCCCACTTCCTGCTGTGCCAAAAAATCCCCGCCTTCATGGAGCAGTTTGTAGATGGTCTGGCCAACTCGTTTGGAGGTGCAGCGCTGTTTTATTTGGGGCTGTCCATGGTGGGCCAGCTGAAAAAACTGACCCGCACTACTGTTGTGGCACTGATTCTTCTTATTACAGCCAAACT
Seq C2 exon
GCTGATGATGCCTCTGATCTGCAGAGGGATGGTGGAAGTTTTGGACAATACAAACAGAAGTACGCTGAACCACACCAGTCTGTCAAACTACGCCTTTCTGTACGGAGTCTTTCCCACCGCACCCAGTGTGGCCATTTATGCAGCTCATTACAACATGGAGCTGGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090804-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PU(68.3=78.9)
A:
PF0354713=Mem_trans=PD(31.1=38.1),PF0354713=Mem_trans=PU(54.7=69.4)
C2:
PF0354713=Mem_trans=FE(32.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCGACTCAAGCTAAAGG
R:
GACAGACTGGTGTGGTTCAGC
Band lengths:
350-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]