MmuEX6102187 @ mm10
Exon Skipping
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73370965-73382308:-
Coord C1 exon
chr2:73381824-73382308
Coord A exon
chr2:73373615-73374014
Coord C2 exon
chr2:73370965-73371130
Length
400 bp
Sequences
Splice sites
3' ss Seq
CCAATATTCTTGTTTTTCAGTTG
3' ss Score
8.71
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGGCCAGTTTGGAAGTGGAGGGAGAGAGAAAATGGATTCTTATTTCTCAGCAAAGAACTCAACGCTTGCTGGTGATATGAATGCGACTTGGCCTGCCTCTCATGGATTTAATGCCACCGGCGATCCACCTTCGATGTCGATAACCCGGCTCTTCCCGGCCTTACTGGAGTGCTTTGGCATAGTCCTTTGTGGCTACATAGCAGGAAGGGCCAATATCATAACCTCAACACAGGCCAAAGGACTGGGGAATTTCGTCTCCAGATTTGCCCTTCCAGCCTTATTATTCAAAAACATGGTTGTGCTTAATTTTTCCAACGTGGACTGGGCTTTTCTCTACAGCGTCTTAATTGGCAAAGCCTCCGTGTTTTTCATTGTGTGTGTATTAACCTTATTGGTGGCCAGTCCTGAGAGCCGGTTTAGCAAAGCTGGACTATTCCCTATTTTTGCTACACAGAGTAATGACTTTGCTTTGGGATACCCTATAG
Seq A exon
TTGAAGCTCTGTACCAATCTACATATCCAGAGTATCTGCAGTACATTTATTTGGTGGCACCAATATCTCTTATGATGCTAAACCCCATAGGGTTTATCTTCTGTGAAATCCAGAAGTCAAAAGACACTCAAAATGCTTCTCAAAATAAAGCAAAAATTGTGGGACTTGGATTTCTACGCGTGTTACAGAACCCGATAGTATTTATGGTCTTTGTTGGCATTGCCTTCAATTTTATTCTTGATAAAAAGATCCCAGTATATATGGAAAACTTTCTGGATGGGCTTGCAAATTCCTTCTCTGGATCAGCCCTGTTTTATCTTGGTCTGACCATGGTAGGAAAAATCAGGCGACTGAAGAAGTCGGCGTTTGTGGTTCTTACTCTTCTCATCACAGCCAAACT
Seq C2 exon
CCTGGTGCTGCCCCTCCTGTGCAGAGAAATGGTGGAACTCCTGGACAAGGGGGACAGCGTAGTGAACCATACAAGCCTGTCCAACTATGCGTTTCTATATGGTGTCTTCCCTGTGGCTCCAGGAGTGGCTATCTTTGCAACACAGTTCAACATGGAAGTGGAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762-'6-6,'6-5,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PU(67.5=73.7)
A:
PF0354713=Mem_trans=PD(31.9=39.6)
C2:
NO
Main Skipping Isoform:
ENSMUST00000076463fB10792
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCAACACAGGCCAAAGG
R:
CGCATAGTTGGACAGGCTTGT
Band lengths:
357-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types