RnoEX0039624 @ rn6
Exon Skipping
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60089271-60100555:-
Coord C1 exon
chr3:60100071-60100555
Coord A exon
chr3:60091849-60092248
Coord C2 exon
chr3:60089271-60089436
Length
400 bp
Sequences
Splice sites
3' ss Seq
CCAATATTCTTGTTTTACAGTTG
3' ss Score
8.45
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGACCAGTCTGGAAGTACAGGGAGAGGGAAGATGGATTCTTATTTCCCAGCAAAGAACTCAACTCTTGCTGTTAATATGAATGAGACTTTGTCTGCCAGTCATGGCTTTAATTCCACCAGTGACCCACCTCCGATGTCAATAACCAGGCTCTTCCCAGCGTTACTCGAGTGCTTTGGCATCGTCCTTTGTGGGTACATAGCGGGAAGGGCCAATGTCATAACATCCACACAGGCCAAAGGACTGGGAAACTTCGTCTCCAGATTTGCCCTCCCAGCTTTATTATTCAAAAACATGGTTGTGCTTAATTTTGCCAATGTGGATTGGGCTTTTCTATATAGCATCCTAATTGGCAAGGCCTCTGTATTTTTCGTTGTATGCGTGTTAACCCTGTTGGTTGCCAGTCCTGAGAGTCGATTTAGCAAAGCTGGACTGTTCCCTATCTTTGCTACACAGAGCAATGACTTTGCTTTGGGATACCCTATAG
Seq A exon
TTGAAGCTCTGTACCAAACCACATACCCAGAATATCTCCAGTACATTTATTTGGTGGCACCAATATCTCTTATGATGTTAAACCCTATAGGGTTCATCTTCTGTGAAATCCAGAAGTCAAAAGACACTCGAAATGCTTCTCAAAACAAAGCAAAAATTGTGGGACTTGGATTCCTGCGCGTGTTACAGAACCCGATAGTGTTTATGGTCTTCGTTGGCATCGCCTTCAATTTTATTCTTGATAAAAAGATCCCTGTGTATATGGAAAATTTTCTTGATGGGCTTGCAAACTCCTTCTCTGGGTCAGCCCTGTTCTATCTCGGTCTGACCATGGTAGGAAAAATCAGGCGGCTGAAGAAGTCGGCGTTCGTGGCGCTCATTGTCCTCATCACAGCTAAACT
Seq C2 exon
CCTGGTGCTGCCCCTTCTGTGCAGAGAAATGGTGGAAGTCCTGGACAAGGGTAACAGCGTAGTGAACCACACGAGTCTGTCCAACTATGCGTTTCTCTATGGCGTCTTCCCTGTGGCTCCAGGAGTGGCTATCTTTGCAACACAATTCAACATGGAAGTGGAGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PU(66.7=73.7)
A:
PF0354713=Mem_trans=PD(32.7=41.0),PF0354713=Mem_trans=PU(56.1=72.4)
C2:
PF0354713=Mem_trans=FE(31.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCCACACAGGCCAAAGG
R:
GGACAGACTCGTGTGGTTCAC
Band lengths:
348-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]