BtaEX0017173 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001146 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr9:81333427-81454817:-
Coord C1 exon
chr9:81454717-81454817
Coord A exon
chr9:81404617-81404691
Coord C2 exon
chr9:81333427-81333527
Length
75 bp
Sequences
Splice sites
3' ss Seq
ACGAAACTTCTTGTCAGCAGATT
3' ss Score
3.65
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCTCGACTTTTGGGGGTGCTGGGTGCAGCCTCGGGGTGCGTGGAGGGCGGACCGACCGTTCGGGCGAGCAGAGCGGCGGGAATCTAGGTCCCTCGGCTCG
Seq A exon
ATTGGCGAACTTACCTGAGAAACTGAGACTCAAGATCGTGAGGATGTGTGACTAGGACCGAAAGCAGATTTCCAG
Seq C2 exon
GTGGAGTCTTTGGATTTTTTAAAAGACAACAGTAATTGGATCTACTTGAAAAATTAAGTGAATTGATTTGTTTGGAACACTCTTTGACCAATTCTTTAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001146-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGGGGGTGCTGGGTG
R:
GGTCAAAGAGTGTTCCAAACAA
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development