RnoEX0041986 @ rn6
Exon Skipping
Gene
ENSRNOG00000011015 | Hivep2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:RGD Symbol;Acc:61988]
Coordinates
chr1:8128679-8271212:+
Coord C1 exon
chr1:8128679-8128779
Coord A exon
chr1:8155769-8155843
Coord C2 exon
chr1:8271112-8271212
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTGAAACTTCTTGTCAGCAGATT
3' ss Score
3.97
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCCTCGACTCTTGGGTACTGGGTGCAGCCCTGGGGTGCGTGGAGGGCGCACCGGCCGCCGGCAGAGCAGAGCGGCGGGAATCTAGGTCCCTTCTCGGCTCG
Seq A exon
ATTGGTGAATTCACCTGAGAAATTGAGACTCAAGATTATGAGAAGTTGTGACTAGGACCAGAAGCAGATGTCCAG
Seq C2 exon
GGGAAGTGGTGTGCTGCATATTCTCCACAGGAAATGGAAAAGTGCAGCTGAACCGTGTGCAGCGCAGGTATGCAGGAGCGCTCTGGGAGCGCTCCAACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011015-'1-3,'1-2,2-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGACTCTTGGGTACTGGGT
R:
AGAGCGCTCCTGCATACCTG
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]