MmuEX0022953 @ mm9
Exon Skipping
Gene
ENSMUSG00000015501 | Hivep2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:MGI Symbol;Acc:MGI:1338076]
Coordinates
chr10:13686185-13786490:+
Coord C1 exon
chr10:13686185-13686503
Coord A exon
chr10:13724007-13724081
Coord C2 exon
chr10:13786389-13786490
Length
75 bp
Sequences
Splice sites
3' ss Seq
ACGAAACTTCTTGTCAGCAGATT
3' ss Score
3.65
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGAGAGCTGGAGAGCGGGGCGCCGCCGTGCGCTGTCTCTCCCCGGTGGAGGAGGGTCTCCGCAAAAAGAGAAAGAAAAAGGAAAAAGAAAAAAAAAAAAAGACATCTTCGGTGACTGTGGCACAAGTATTTGCCAAGTTGAGTCTTGGACATTGAAGCTTGCCCGGAGCCCGAGCAACTTGAAAGGTCCTCTGGCTGGGTAGCAGCCTCCCTCCACGCTTCGACTCTTGGGTACTGGGTGCAGCCCTGGGGTGCGTGGAGGGCGCACCGGCCGCTGGCAGAGCAGAGCGGCGGGAATCTAGGTCCCTTCTCGGCTCG
Seq A exon
ATTGGTGAATTCACCTGAGAAATTGAGATTCAAGATTATGAGAAGTTGTGACTAGGACCAGAAGCAGGTATCCAG
Seq C2 exon
GTGAAGTCTGTGAGTTTTGTCAAAGCCAACGATAATCAGACCTACTTGAAAGATTAAGTGAATTGATTTCATTGGAACATTCTCTCAACAGCCAGCCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015501-'1-2,'1-1,3-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGTCCTCTGGCTGGGTA
R:
CGTTGGCTTTGACAAAACTCACA
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: