HsaEX0030055 @ hg19
Exon Skipping
Gene
ENSG00000010818 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:4921]
Coordinates
chr6:143158072-143266728:-
Coord C1 exon
chr6:143266628-143266728
Coord A exon
chr6:143222801-143222874
Coord C2 exon
chr6:143158072-143158184
Length
74 bp
Sequences
Splice sites
3' ss Seq
ACAAAACTTCTTGTCGGCAGATT
3' ss Score
5.8
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCTCGCGTCTGGGGTGCTGGGTGCAGCCTCGGGGTGCGCGGAGGGCGGACCGGCCACCGCGAGAGCGGAGCGGCGGGAATCTAGGTCCCTCCTCGGCTCG
Seq A exon
ATTGGCGAATTTACCTGAGACATTGAGGCTCAAGATTATGAGAATGTGTGATAGGACCAAAAGCATATTTCCAG
Seq C2 exon
GTGGAGCCTTTGAATTTTTTAAAAGACCATAGTAATCAGATCTACTTGAAAAATTAAGTGAATTGATTTGGTTGGAATGCTCTTTTACCGATGCTTTAACATACAGCCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010818-'0-1,'0-0,2-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGGGGTGCTGGGTG
R:
AGCATTCCAACCAAATCAATTCACT
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)