BtaEX0017193 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033398 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr28:25758056-25762953:+
Coord C1 exon
chr28:25758056-25758218
Coord A exon
chr28:25762593-25762741
Coord C2 exon
chr28:25762834-25762953
Length
149 bp
Sequences
Splice sites
3' ss Seq
GGGGTTTATATTTTTCATAGAAA
3' ss Score
4.85
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
GTGGACAGGTTCCTGTACCACATGCGCCTCTCCGATGAGACCCTTTTGGACATCATGGCTCGGTTCCAGGCGGAAATGCAGAAGGGCCTAGGGAAGGACACCAACCCCACAGCCTCGGTGAAGATGCTGCCCACCTTCGTCAGGGCCATTCCAGATGGCTCGG
Seq A exon
AAAATGGGGAATTTCTCTCCCTGGATCTTGGAGGATCCAAGTTTCGAGTCTTGAAGGTACAAGTCTCTGAAGAGGGGAAACGAAATGTCCAGATGGAGAGTCAGTTTTACCCAACACCCAATGAAATCATCCGAGGGAATGGCACAGAG
Seq C2 exon
CTGTTTGAATACGTAGCTGACTGTCTGGCAGATTTCATGAAGACCAAAGAACTGATGCAGAAGAAATTACCTCTTGGCCTAACCTTTTCCTTTCCCTGCAAACAGACTAAATTAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033398_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.060 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.2=100)
A:
PF0034916=Hexokinase_1=FE(23.8=100)
C2:
PF0034916=Hexokinase_1=FE(18.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTCCTGTACCACATGCG
R:
GGGAAAGGAAAAGGTTAGGCCA
Band lengths:
254-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development