DreEX6061140 @ danRer10
Exon Skipping
Gene
ENSDARG00000038703 | hkdc1
Description
hexokinase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9801]
Coordinates
chr13:22896593-22897420:-
Coord C1 exon
chr13:22897258-22897420
Coord A exon
chr13:22896983-22897131
Coord C2 exon
chr13:22896593-22896712
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTTATATGTTTGTTCTTCAGAGA
3' ss Score
9.14
5' ss Seq
GAGGTGATT
5' ss Score
5.41
Exon sequences
Seq C1 exon
GTAGACAGATTTCTGTATGCAATGCGCCTATCAGAAGATCAGCTGAAGGACATATCAGCTCGCTTTCGGCTCGAGATGGAGAAGGGACTGTCAAGCGAGAGCAATGCTGCAGCTGCTGTGAAGATGCTCCCGACTCATGTTTATTCAACACCCGATGGCTCAG
Seq A exon
AGAAGGGGGAATTCCTGGCACTGGATCTGGGGGGCTCAAAATTTAAAGTACTCCAGGTAAAGGTTTCAGAAGATGGGAAGGGAAAAGTGGAGATGGAGAGTGAAACCTTTCCCATCCCTGAAGAGATTGTCAATGGCAGAGGAACAGAG
Seq C2 exon
CTTTTTGAGCATGTGGCAGAATCCTTGAAGTCTTTTCTACAGAAGCACCACATTAATCACACAAGAAAACCTCTCGGCTTCACTTTCTCCTTCCCATGTGCACAGTCCAAAATAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038703-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.060 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.2=100)
A:
PF0034916=Hexokinase_1=FE(23.8=100)
C2:
PF0034916=Hexokinase_1=FE(18.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCCTATCAGAAGATCAGC
R:
GACTGTGCACATGGGAAGGAG
Band lengths:
248-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]