HsaEX6088717 @ hg19
Exon Skipping
Gene
ENSG00000156510 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:23302]
Coordinates
chr10:70986963-70992889:+
Coord C1 exon
chr10:70986963-70987125
Coord A exon
chr10:70992520-70992668
Coord C2 exon
chr10:70992770-70992889
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTGAATTTGTTTCTTAATAGAAA
3' ss Score
7.12
5' ss Seq
GAGGTACCT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GTGGACAGGTTCCTGTATCACATGCGGCTCTCCGATGACACCCTTTTGGACATCATGAGGCGGTTCCGGGCTGAGATGGAGAAGGGCCTGGCAAAGGACACCAACCCCACGGCTGCAGTGAAGATGTTGCCCACCTTCGTCAGGGCCATTCCCGATGGTTCCG
Seq A exon
AAAATGGGGAGTTCCTTTCCCTGGATCTCGGAGGGTCCAAGTTCCGAGTGCTGAAGGTGCAAGTCGCTGAAGAGGGGAAGCGACACGTGCAGATGGAGAGTCAGTTCTACCCAACGCCCAATGAAATCATCCGCGGGAACGGCACAGAG
Seq C2 exon
CTGTTTGAATATGTAGCTGACTGTCTGGCAGATTTCATGAAGACCAAAGATTTAAAGCATAAGAAATTGCCCCTTGGCCTAACTTTTTCTTTCCCCTGTCGACAGACTAAACTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156510-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
83%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.060 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.2=100)
A:
PF0034916=Hexokinase_1=FE(23.8=100)
C2:
PF0034916=Hexokinase_1=FE(18.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCCGATGACACCCTTTT
R:
AGTCTGTCGACAGGGGAAAGA
Band lengths:
245-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)