RnoEX6062741 @ rn6
Exon Skipping
Gene
ENSRNOG00000049045 | AABR07045032.1
Description
NA
Coordinates
chr20:32042262-32048100:-
Coord C1 exon
chr20:32047938-32048100
Coord A exon
chr20:32042463-32042611
Coord C2 exon
chr20:32042262-32042381
Length
149 bp
Sequences
Splice sites
3' ss Seq
ACTGTTTTCATTTCTCCTAGAAA
3' ss Score
8.73
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GTGGACAGGTTCCTGTACCATATGCGGCTCTCGGATGAGACCCTTGTGGACATCATGGCCCGATTCCAGGCCGAGATGGAGAAAGGCTTAGGGAAGGACACCAACCCCACTGCCTCAGTGAAGATGCTGCCCACATTCGTCAGGGCCATTCCAGATGGCTCAG
Seq A exon
AAAACGGGGAATTCCTTTCCCTGGATCTCGGAGGGTCCAAGTTTCGGGTCCTGAAGGTGCAAGTCTCGGAAGAGGGCAAGCAAAATGTCCAGATGGAGAGCCAGTTCTACCCAATGCCCAATGAAATCACCCGTGGGAATGGCACGGAG
Seq C2 exon
CTCTTTGACTATGTAGCTGACTGCCTGGCAGATTTCATGAAGACCAAAGATCTGACGCACAAGAAGCTGCCTCTGGGCTTCACCTTTTCTTTTCCCTGCAGACAGAATAAGTTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049045-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.2=100)
A:
PF0034916=Hexokinase_1=FE(23.8=100)
C2:
PF0034916=Hexokinase_1=FE(18.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCTGTACCATATGCGGC
R:
AGAAAAGGTGAAGCCCAGAGG
Band lengths:
246-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]