BtaEX0018041 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16381656-16382957:+
Coord C1 exon
chr7:16381656-16381767
Coord A exon
chr7:16382195-16382290
Coord C2 exon
chr7:16382846-16382957
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCTTGTTTCCTGCCTTCAGATG
3' ss Score
11.25
5' ss Seq
GCAGTATAG
5' ss Score
-6.17
Exon sequences
Seq C1 exon
CCCCTCGAGCTTCTCTGTGAGAAGTCCATCGGCACAGCCAACAGACCCATGGGTGCTGGCGAGGCCCTGCGGAGGGTGCTGGAGTGCCTGGCTTCGGGCATCGTCATGCCAG
Seq A exon
ATGGTTCTGGCATTTATGACCCTTGTGAAAAAGAAGCCACTGATGCTATTGGGCATCTAGACAGACAGCAACGGGAGATATCACACAGAGTGCGCA
Seq C2 exon
CACGCGCTGCGACTAGCTGCGTTCGGCCAGCTCCATAAAGTACTGGGTATGGACCCTCTGCCATCTAAGATGCCCAAGAAACCAAAGAATGAAAACCCAGTGGACTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.553
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(14.9=100)
A:
PF075289=DZF=FE(11.7=100)
C2:
PF075289=DZF=PD(8.9=57.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCGAGCTTCTCTGTGAGA
R:
AGATGGCAGAGGGTCCATACC
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development