RnoEX0043973 @ rn6
Exon Skipping
Gene
ENSRNOG00000022741 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:RGD Symbol;Acc:619734]
Coordinates
chr8:22430424-22431723:+
Coord C1 exon
chr8:22430424-22430535
Coord A exon
chr8:22430961-22431058
Coord C2 exon
chr8:22431612-22431723
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCCTTGTTTCCTGCCTTCAGATG
3' ss Score
11.25
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CCTCTGGAGCTGCTGTGTGAGAAGTCCATCGGCACTGCCAATAGGCCAATGGGTGCTGGTGAAGCCCTGCGGAGAGTACTGGAGTGCCTGGCTTCCGGCATCGTAATGCCAG
Seq A exon
ATGGTTCTGGCATTTATGACCCTTGTGAAAAAGAAGCCACTGATGCTATTGGGCATCTAGACAGACAGCAACGGGAAGATATCACACAGAGTGCGCAG
Seq C2 exon
CATGCTCTGCGGCTTGCTGCCTTTGGCCAGCTCCATAAAGTACTGGGAATGGACCCACTGCCTTCCAAAATGCCCAAGAAACCAAAGAACGAGAACCCGGTGGACTATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022741_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.576 C2=0.579
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(14.9=100)
A:
PF075289=DZF=FE(12.9=100)
C2:
PF075289=DZF=PD(8.8=57.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAAGTCCATCGGCACTG
R:
TTGGGCATTTTGGAAGGCAGT
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]