GgaEX6015583 @ galGal4
Exon Skipping
Gene
ENSGALG00000001187 | STRBP
Description
Spermatid perinuclear RNA-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIL4]
Coordinates
chr17:8913841-8915279:-
Coord C1 exon
chr17:8915168-8915279
Coord A exon
chr17:8914386-8914483
Coord C2 exon
chr17:8913841-8913952
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTATCTTCTTCCTTCCCAGGAG
3' ss Score
11.06
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCACTCGAGCTTATATGTGAAAAATCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAAGCATTACGACGAGTGATGGAGTGCTTGGCATCTGGAATTCTGCTTCCCG
Seq A exon
GAGGCCCTGGTCTGCATGACCCCTGTGAACGGGAGCCAACAGATGCTTTGTCTGATATGACAGTTCAGCAAAAAGAAGCCATTACGCACAGTGCTCAG
Seq C2 exon
CATGCCCTCAGATTATCAGCCTTTGGTCAGATTTATAAGGTTTTGGAAATGGATCCCCTCCCATCAAATAAATCATTTCAGAAATATTCCTGGTCAGTAGCTGACAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187-'30-24,'30-22,31-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.576 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(14.9=100)
A:
PF075289=DZF=FE(12.9=100)
C2:
PF075289=DZF=PD(8.9=57.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATAGACCTTTGGGCGCTGG
R:
CAGCTACTGACCAGGAATATTTCTGA
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]