HsaEX6062928 @ hg19
Exon Skipping
Gene
ENSG00000165209 | STRBP
Description
spermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:16462]
Coordinates
chr9:125920291-125921486:-
Coord C1 exon
chr9:125921375-125921486
Coord A exon
chr9:125920611-125920708
Coord C2 exon
chr9:125920291-125920402
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTCCTTTGCCAAAGGGG
3' ss Score
6.79
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
CCACTAGAACTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTGGAATACTACTTCCTG
Seq A exon
GGGGTCCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACAGATGCTCTGAGCTATATGACCATCCAGCAAAAAGAAGATATTACCCACAGTGCACAG
Seq C2 exon
CATGCACTCAGACTATCAGCCTTTGGCCAGATTTACAAAGTGCTGGAGATGGACCCCCTTCCATCTAGTAAGCCTTTTCAGAAGTATTCCTGGTCAGTTACTGATAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165209-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.026
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(14.9=100)
A:
PF075289=DZF=FE(12.9=100)
C2:
PF075289=DZF=PD(8.9=57.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATAGACCTTTGGGCGCTGG
R:
TGACCAGGAATACTTCTGAAAAGGC
Band lengths:
170-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)