MmuEX6100928 @ mm9
Exon Skipping
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37479693-37480809:-
Coord C1 exon
chr2:37480698-37480809
Coord A exon
chr2:37480013-37480110
Coord C2 exon
chr2:37479693-37479804
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTCTTTTGCCAAAGGTG
3' ss Score
9.34
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CCACTAGAGCTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTGGAATACTACTTCCTG
Seq A exon
GTGGCCCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACAGATGCTCTAAGCTATATGACCACTCAGCAAAAAGAAGATATTACCCATAGTGCACAG
Seq C2 exon
CATGCACTTAGACTATCAGCCTTTGGCCAGATTTATAAAGTGCTGGAGATGGACCCTCTTCCGTCTAGTAAGCCTTTTCAGAAGTATTCCTGGTCAGTTACTGATAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.455 C2=0.053
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(14.9=100)
A:
PF075289=DZF=FE(12.9=100)
C2:
PF075289=DZF=PD(8.9=57.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATAGACCTTTGGGCGCTGG
R:
TGACCAGGAATACTTCTGAAAAGGC
Band lengths:
170-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: