BtaEX6046039 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021921 | STRBP
Description
Bos taurus spermatid perinuclear RNA binding protein (STRBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001075739]
Coordinates
chr11:94319263-94320455:-
Coord C1 exon
chr11:94320344-94320455
Coord A exon
chr11:94319570-94319667
Coord C2 exon
chr11:94319263-94319374
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGCCTTTGCCAAAGGGG
3' ss Score
5.31
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CCACTAGAGCTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTGGAATTCTACTTCCTG
Seq A exon
GGGGTCCTGGTCTTCATGATCCTTGTGAGCGAGATCCAACAGATGCTCTGAGCTATATGACCATCCAGCAAAAAGAAGATATTACCCACAGTGCACAG
Seq C2 exon
CATGCACTCAGACTATCAGCCTTTGGTCAGATTTATAAAGTGCTGGAGATGGACCCCCTTCCATCTAGTAAGCCTTTTCAGAAATATTCCTGGTCAGTTACTGATAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021921-'26-22,'26-21,27-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.026
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(14.9=100)
A:
PF075289=DZF=FE(12.9=100)
C2:
PF075289=DZF=PD(8.9=57.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATAGACCTTTGGGCGCTGG
R:
TGACCAGGAATATTTCTGAAAAGGCT
Band lengths:
170-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]