RnoEX0087168 @ rn6
Exon Skipping
Gene
ENSRNOG00000010150 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:RGD Symbol;Acc:620673]
Coordinates
chr3:21860400-21888448:-
Coord C1 exon
chr3:21888304-21888448
Coord A exon
chr3:21875408-21875505
Coord C2 exon
chr3:21860400-21860492
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTCTTTGGCCAAAGGTG
3' ss Score
8.49
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AAACTAACAGAAGAGAAATACCAAGTGGAACAATGTATAAATGAAGCGTCCATTATAATTCGGAACACGAAAGAGCCAACACTGACTTTGAAGGTGATACTTACTTCCCCTCTAATTAGGGACGAATTGGAGAAGAAGGATGGAG
Seq A exon
GTGGTCCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACCGATGCTCTAAGCTACATGACCACTCAGCAAAAAGAAGATATCACCCATAGTGCACAG
Seq C2 exon
GTGCCGGGTCTTCAGCTCTAAAGAGGCCATTTGAAGATGGATTAGGGGATGATAAAGATCCCAACAAGAAGATGAAACGAAACTTAAGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010150_MULTIEX2-5/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.455 C2=0.781
Domain overlap (PFAM):
C1:
PF075289=DZF=PD(50.5=93.9)
A:
PF075289=DZF=FE(12.9=100)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000090576fB14524
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACGAAAGAGCCAACAC
R:
AGTTTCGTTTCATCTTCTTGTTGGG
Band lengths:
168-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]