DreEX0039200 @ danRer10
Exon Skipping
Gene
ENSDARG00000105177 | ilf3b
Description
interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
Coordinates
chr3:13707804-13708955:+
Coord C1 exon
chr3:13707804-13707915
Coord A exon
chr3:13708154-13708251
Coord C2 exon
chr3:13708844-13708955
Length
98 bp
Sequences
Splice sites
3' ss Seq
TACTGTAAATTTGGTTTCAGATG
3' ss Score
6.65
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CCCTTAGAACTGCTGTGTGAAAAGGCGATTGGCACTGGGAATCGGCCAATGGGAGCAGGAGAAGCTCTCCGTAGAGTTCTGGAATGTCTTGCATCTGGAATCCTCATGGCTG
Seq A exon
ATGGTTCAGGTATTTGTGACCCTTGTGAAAAGGAGCTAACAGATGCCATCAGTCACGTGGACCGCCAGCAGCGGGAGGACATCACTCAGAGTGCTCAG
Seq C2 exon
CATGCTTTGAGGCTTTCGGCTTTTGGACAGCTGCACAAAGTGCTCGGCATGGACCCACTTCCTTCAAAAATGCCCAGAAAACCACGCAGTGATACTCCTATTGACTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105177-'11-19,'11-17,12-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.727 C2=0.645
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(14.8=100)
A:
PF075289=DZF=PD(1.7=3.0),PF075289=DZF=FE(54.2=100)
C2:
PF075289=DZF=PD(37.3=57.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCTGTGTGAAAAGGCGA
R:
TTGAAGGAAGTGGGTCCATGC
Band lengths:
172-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]