BtaEX0018547 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018169 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr19:56473589-56475492:-
Coord C1 exon
chr19:56475254-56475492
Coord A exon
chr19:56474309-56474458
Coord C2 exon
chr19:56473589-56473777
Length
150 bp
Sequences
Splice sites
3' ss Seq
GCGGCGCCCCCTGTCTGCAGGCT
3' ss Score
8.63
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
AGAGCACCTGGTGAACGGGCGGATGGACTTTGCCTTCCCGGGCAGCGCCAACTCCCTGCACAGGATGACCGTGAGCACCGCGGCCCACGGCGCCCACCTGAGCCCGCAGTTGTCCCACCGCGTGCTGAGCACCTCGTCCACCCTCACGCGGGACTACCACTCGCTGACCCGCACGGAGCACTCGCACTCCGCCACGCTGCCCAGGGACTACTCCACTCTCACCTCCCTTTCCTCCCAAA
Seq A exon
GCTCCCGCTTGGCTGCGGGTGTGCCCAACACACCCACCCGCCTGGTGTTCTCCGCCCTTGGACCCACGTCTCTGAAAGTGAGCTGGCAGGAGCCGCAGTGTGAGCGTGCGCTGCAGGGCTACAGTGTGGAGTACCAGCTGCTGAACGGCG
Seq C2 exon
GTGAGCTGTATCGCCTCAACATCCCCAACCCCAGCCAGACCTCGGTGGTGGTGGAGGACCTCCTGCCCAACCACTCCTACGTGTTCCGTGTGCGGGCCCAGAGCCAGGAGGGCTGGGGCCCGGAGCGTGAGGGTGTCATCACCATTGAGTCACAGGTGCACCCGCAGAGCCCGCTCTGCCCCCTGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018169-'46-51,'46-50,49-51
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.790 A=0.137 C2=0.195
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(48.8=80.4)
C2:
PF0004116=fn3=PD(50.0=65.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGACTTTGCCTTCCCGG
R:
GGGATGTTGAGGCGATACAGC
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development