DreEX0040170 @ danRer10
Exon Skipping
Gene
ENSDARG00000028507 | itgb4
Description
integrin, beta 4 [Source:ZFIN;Acc:ZDB-GENE-030131-7209]
Coordinates
chr8:13108415-13113924:+
Coord C1 exon
chr8:13108415-13108528
Coord A exon
chr8:13110809-13110958
Coord C2 exon
chr8:13113736-13113924
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGAACTGCTCGTGCCCTCAGAAT
3' ss Score
9.31
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
Exon sequences
Seq C1 exon
GGGTCTCTAGCTTCAGCCAGACTACATCTACCAGCTACAGCTTGAGCTCCAGAGCTCGTACTCAGTCTGAAGATATCAACGATGCTCTGCTGAACCTGGATAGTGTTCTTCAGG
Seq A exon
AATCGCGCTTCACCCCGGGTGTTCCCGCGACTCCCAGCAGACTGGTGTTTTCAGCTCTGGGCCACACGGCTCTCAAAGTGAGCTGGCAGGAGCCACACTGCGAGTCTGATGTACTGGGATACTGCGTCCTTTACCAGCTCATCAATGGAG
Seq C2 exon
GTGACGTAAAACGTATCGAGGTGAACAATCCTGCTCAGAACTCAGTGCTGGTTCAGGATCTCCTGCCTAACCAGTCCTACATCTTCAAAGTCAAAGCACAGAGTCGAGAGGGCTGGGGTCCTGAGAGAGAGGGCGTCATTACCATTGAGTCCAACGTCGACCCCAAGAGTCCACTGAGCCCAGTGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028507-'39-43,'39-42,40-43
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.033 C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(48.8=80.4)
C2:
PF0004116=fn3=PD(50.0=65.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCTCTAGCTTCAGCCAGA
R:
AATGACGCCCTCTCTCTCAGG
Band lengths:
254-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]