GgaEX7009448 @ galGal4
Exon Skipping
Gene
ENSGALG00000002389 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr18:4696409-4698829:-
Coord C1 exon
chr18:4698671-4698829
Coord A exon
chr18:4697081-4697230
Coord C2 exon
chr18:4696409-4696597
Length
150 bp
Sequences
Splice sites
3' ss Seq
ACCGTCCTATTTTGCTTCAGATT
3' ss Score
10.88
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
AACACCTGCTGAATGGCCGCATGGATTACTTCTCCGGCAGCAGCAGCACGCTGACCAGGACAGCAAACACCAGCTACCACCAGCACGTGCAGCAGGAGCACAGGGTGATGGGGAGCTCCTCACTGACCAGAGACTACTCCACCATGATGGCGGGGCACG
Seq A exon
ATTCCAGGTTTCCACTGGGTGTCCCTGACATCCCCACGAGGTTGGTGTTCTCTGCTCTGGGACCCACCTCGCTGAAGGTGAGCTGGCAGGAGCCGCGCTGCGAGAAGGAGGTGCAGGGCTACAGCGTGCAGTACCAGCTGCTCAATGGAG
Seq C2 exon
GAGAGGTGCATCGCGTCACCGTATCCAACCCCAGCCGGAACTCGGTGGTTGTGGAGAACCTGCTGCCCAACCACTCCTACATCTTCAAGGTGAAGGCACAGAGTGAGGAGGGCTGGGGCCCTGAGAGGGAAGGAGTCATCACCATAGAGTCCCAGGTGGACCCACAGAGCCCACTGAGCCCCGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389-'40-45,'40-44,43-45=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.642 A=0.078 C2=0.458
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(48.8=80.4)
C2:
PF0004116=fn3=PD(50.0=65.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCATGGATTACTTCTCCGG
R:
CCTCCTCACTCTGTGCCTTCA
Band lengths:
254-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]