RnoEX6050577 @ rn6
Exon Skipping
Gene
ENSRNOG00000005580 | Itgb4
Description
integrin subunit beta 4 [Source:RGD Symbol;Acc:2928]
Coordinates
chr10:104557614-104558965:+
Coord C1 exon
chr10:104557614-104557772
Coord A exon
chr10:104558184-104558333
Coord C2 exon
chr10:104558777-104558965
Length
150 bp
Sequences
Splice sites
3' ss Seq
GGCCACCCTCCATAATCCAGATT
3' ss Score
3.58
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GCCTCCCTCCTATCTGGGAAGATGGGAGGAGCAGGCTTCCGCTGTCCTGGACCCTTGGGTCCTGGAGCCGGGCTCAGATGAAGGGTGTGCCCGCATCCAGGGGCTCACCAGACTCTATAATCCTGGCCGGGCAGTCAGCAGCGCCCTCCTGGGGTACAG
Seq A exon
ATTCCCGTGGGGCTATGGGTGTGCCCGACACACCCACTCGGCTGGTGTTCTCCGCCCTGGGGCCCACATCTCTGAAGGTGAGCTGGCAGGAGCCACAGTGTGATCGAGCACTGCTGGGCTACAGCGTGGAATACCAGCTACTCAACGGCG
Seq C2 exon
GCGAGATGCATCGGCTCAACATCCCTAACCCTGGCCAAACCTCTGTGGTGGTAGAGGATCTCCTGCCTAACCACTCCTATGTGTTCCGGGTGCGGGCACAAAGCCAGGAGGGCTGGGGCCGGGAGCGAGAGGGTGTCATCACCATCGAGTCCCAGGTGCACCCGCAGAGCCCTCTCTGCCCCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005580-'50-53,'50-52,51-53=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=0.196 C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=PU(48.8=80.4)
C2:
PF0004116=fn3=PD(50.0=65.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGATGAAGGGTGTGCC
R:
TGGGACTCGATGGTGATGACA
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]