BtaEX0018557 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003709 | ITGB8
Description
Bos taurus integrin, beta 8 (ITGB8), mRNA. [Source:RefSeq mRNA;Acc:NM_001192875]
Coordinates
chr4:29124581-29170139:+
Coord C1 exon
chr4:29124581-29124707
Coord A exon
chr4:29159022-29159107
Coord C2 exon
chr4:29169968-29170139
Length
86 bp
Sequences
Splice sites
3' ss Seq
CATTTTATCCTCCATTACAGAAG
3' ss Score
7.94
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
Exon sequences
Seq C1 exon
ATGTGCCGCTCGGCCCTGGTTTTTTTTACTGCCACATTAGTCTGCCTGCAAAACTGCAGGCCAGGTCCTGTCCCGTTCCTCCGGGCGGCCTGGATGTTTTCAGTTGTTCTTGGACTGGGCCAAAGTG
Seq A exon
AAGACAATAGATGTGCATCTTCGAATGCAGTGTCCTGCACCAAGTGCCTTGCGCTGGGTCCGGAATGTGGATGGTGTGCTCAAGAG
Seq C2 exon
GATTTCATTTCAGGTGGATCAAAGAATGAACGTTGTGACACTGTTTCCAATTTAATACACAAAGGCTGCTCAATTGATTTAATAGAATACCCTTCTGTGCGTGTAATGCCAAGTGAAAATGAAATTAATACCCAGGTGACACCAGGAGAAGTGCTGATCCAGCTGCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003709-'1-5,'1-3,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(4.1=58.6)
C2:
PF0036213=Integrin_beta=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTCTTGGACTGGGCCAA
R:
TCAGCACTTCTCCTGGTGTCA
Band lengths:
182-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development