RnoEX6030121 @ rn6
Exon Skipping
Gene
ENSRNOG00000006569 | Itgb8
Description
integrin subunit beta 8 [Source:RGD Symbol;Acc:1311374]
Coordinates
chr6:147132679-147172022:-
Coord C1 exon
chr6:147171698-147172022
Coord A exon
chr6:147138841-147138926
Coord C2 exon
chr6:147132679-147132853
Length
86 bp
Sequences
Splice sites
3' ss Seq
CATCTTAACTTGAATTTCAGAAC
3' ss Score
6.45
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
CAGGGGCCCTGAGATGCAGAGAGCTGCCCTGGCCCGCATACCTGTATCGCCTACTCAGAGCGACTGGGTCGATCAACCCGGCCTGTTGAAAAGTTCCTAGGGATTCTCGGCCCACGAGCCTCAAGGTGCGCTCCCAAGGCGCGAGAGCGCATCAGGAAAGCAACTAGGCAGCGTGCACGGGGCAGGCTGCTTTGCAGTATGTGTGGGTCGGCCCTGGCTTTTCTGACTGCTGCACTGCTCTGCCTGCACAACTGCCAGCGAGGTCCAGCGTTGGTTCTTGGGGCGGCCTGGGTATTTTCACTTGTTCTCGGATTGGGCCAAAGTG
Seq A exon
AACATAATAGATGTGACTCTGCAAATGTGGTCTCCTGCGCCAGGTGCCTCCAGCTGGGTCCGGAATGTGGATGGTGTGTTCAAGAG
Seq C2 exon
GATTTTGTTTCAGGTGGATCAAGAAGTGAACGTTGTGATACTGTTTCCAATTTGATAAGCAAAGGCTGTCCAGTTGACTCAATAGAATACCTGTCTGTGCATGTAGTAACATCAAGTGAGAATGAAATCAATACACAAGTGACTCCGGGAGATGTCTCAATCCAACTGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006569-'2-2,'2-1,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(1.4=2.3)
A:
PF0143720=PSI=PU(37.3=86.2),PF0036213=Integrin_beta=PU(21.2=58.6)
C2:
PF0143720=PSI=PD(53.4=52.5),PF0036213=Integrin_beta=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCGGATTGGGCCAAAGT
R:
TGAGACATCTCCCGGAGTCAC
Band lengths:
181-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]