BtaEX0018603 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83634979-83639293:+
Coord C1 exon
chr5:83634979-83635108
Coord A exon
chr5:83637118-83637175
Coord C2 exon
chr5:83639128-83639293
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTACCATTTATCTTTGCAGCTA
3' ss Score
10.07
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
TTTATCTTGAGTGTCAGACTAGATTATAGGATCTCCTATATGCTGTCAATATATAAGAAGGAATTCGGGGAGAACAACGGAAATGCCGAAATGTCCACCAATGGCTCTCCTGATACACTGCTGCCATCAG
Seq A exon
CTATTGTTCCTGATATAGATGAAATTGCAGCTCAGGCAGAAACTATGTTTGCTGGAAG
Seq C2 exon
AAAGGAGAAAAATCCAGTTCAACTTGATGACGAAGGAGGCAGGACGTTTTTACGGGTTCTTATTCATCTGATCATGCATGACTACCCGCCTCTGCTATCAGGAGCCCTGCAGCTGCTGTTCAAGCACTTCAGCCAGAGAGCGGAAGTTTTACAGGCATTTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'24-27,'24-26,25-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCAATGGCTCTCCTGAT
R:
CTGATAGCAGAGGCGGGTAGT
Band lengths:
138-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development