DreEX6064858 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:16020363-16020901:+
Coord C1 exon
chr18:16020363-16020429
Coord A exon
chr18:16020565-16020616
Coord C2 exon
chr18:16020733-16020901
Length
52 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGTGGTCCCTTCCAGAAC
3' ss Score
10.44
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TTCATTCTGAATGTGCGTCTGGATTACCGCATCACCTATCTGCTGTCCATTTATAAAAAAGAGTTTG
Seq A exon
AACCAAACATCGAGGACATTGCAGAAAAAGCTGAGAATATGTTTTCAGGAAG
Seq C2 exon
CGCTAAAGAGAGAAGCCCAGTTGACCTCGACGATGAAGGCGGTCAGACATTTCTGCGGGTGCTCATTCACCTCATCATGCAGGACTATCCTCCGCTGGTTTCTGGCTCTCTTCAACTCATCTTTAAACACTTCAGCCAGAGATCTGAAGTTCTGCAGGCCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'24-27,'24-26,26-27=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCACCTATCTGCTGTCC
R:
CCAGAAACCAGCGGAGGATAG
Band lengths:
145-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]