RnoEX0045419 @ rn6
Exon Skipping
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180650526-180658522:-
Coord C1 exon
chr4:180658393-180658522
Coord A exon
chr4:180654311-180654368
Coord C2 exon
chr4:180650526-180650691
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTCACTGTGCTTCTTCGCAGCTC
3' ss Score
9.32
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
TTCATCCTGAGTGTCAGGCTGGACTACCGTATCTCTTACATGCTGTCCATATACAAGAAGGAATTTGGGGAGAATGATGGCAACGGTGACCCCTCTGCCAGCGGCACCCCGGAAACATTGCTACCATCAG
Seq A exon
CTCTTGTCCCTGACATTGATGAGATTGCGGCTCAGGCAGAAACGATGTTTGCTGGAAG
Seq C2 exon
AAAAGAAAAAACTCCAGTTCAGCTTGATGATGAGGGAGGCAGAACCTTCTTAAGAGTCCTCATCCACCTGATCATGCATGACTATGCTCCACTGCTGTCCGGGGCCCTGCAGCTGCTGTTCAAACACTTCAGCCAGAGAGCAGAAGTGCTTCAGGCCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804-'29-30,'29-29,31-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGGAGAATGATGGCAACG
R:
TGCATGATCAGGTGGATGAGG
Band lengths:
144-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]