DreEX6023183 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39958521-39959327:+
Coord C1 exon
chr6:39958521-39958647
Coord A exon
chr6:39959020-39959074
Coord C2 exon
chr6:39959162-39959327
Length
55 bp
Sequences
Splice sites
3' ss Seq
GTAACTTCTGTTTTTGTTAGGTG
3' ss Score
7.68
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TTTATTCTGAATGTGCGGTTGGACTACAGGATCTCCTGCCTCCTCTGTATCTTTAAGACAGAGTTTGATGAAAGTAACTCTCAAAGTGAACCATCTTTAAGCCCAGAATCTCCTGCCAGCGTTCAAG
Seq A exon
GTGCGCTAGACTTTGAGCACATTGAAGAGCAGGCGGAGGGTATTTTTGGAGGAAG
Seq C2 exon
TGAAGAGAACACCCCGCTGGATCTTGATGATCATGGTGGACGGACATTTCTGAGGGTCCTGCTTCACCTGACCATGCATGACTATCCTCCGCTGGTATCTCGAGCTCTTCACCTGCTCTTCAGACACTTTAGCCAACGCCAGGAGGTCCTACAGGCCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'25-30,'25-27,26-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=0.263 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTCCTGCCAGCGTTCAAG
R:
AGCAGGTGAAGAGCTCGAGAT
Band lengths:
138-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]