MmuEX6007923 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146347068-146354759:-
Coord C1 exon
chr6:146354630-146354759
Coord A exon
chr6:146350023-146350080
Coord C2 exon
chr6:146347068-146347233
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTCACTGTGTTTCTTCACAGCTC
3' ss Score
10.67
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TTCATCCTGAGCGTCAGGCTGGACTACCGGATCTCTTACATGCTGTCCATATACAAGAAGGAATTTGGAGACAACAACGACAATGGTGACCCCTCTGCCAGCGGCACCCCAGACACACTGCTACCATCAG
Seq A exon
CTCTTGTCCCTGACATCGACGAGATTGCGGCTCAGGCAGAAACAATGTTCGCTGGAAG
Seq C2 exon
AAAAGAAAAAACTCCAGTTCAGCTTGATGATGAAGGAGGCAGGACGTTCTTACGCGTCCTCATCCACCTGATCATGCACGACTATGCTCCGCTGCTGTCCGGAGCCCTGCAGCTGCTCTTCAAGCATTTCAGCCAGAGAGCAGAAGTGCTTCAGGCCTTTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-'37-37,'37-35,38-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACGACAATGGTGACCCC
R:
AGTCGTGCATGATCAGGTGGA
Band lengths:
141-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types