BtaEX0018819 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30446093-30447846:-
Coord C1 exon
chr5:30447629-30447846
Coord A exon
chr5:30446601-30446932
Coord C2 exon
chr5:30446093-30446199
Length
332 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCCTGCTCTCCCCAGGCG
3' ss Score
11.28
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGAAGGGAGACCTGATCGGCTGTGAGCTGCCCCGGCGTGAGCAGGTGGTCAAGGCCAACGCCGATGTGAAGGGGCTGACGTACTGCGTCCTACAGTGTTTGCAGCTGGCCGGGCTGCATGAGAGCCTGGCACTGTACCCCGAGTTTGCCCCCCGCTTCAGCCGGGGCCTCCGAGGGGAGCTCAGCTACAACCTGGGTGCTGGTGGAGGCCCCGCCGAG
Seq A exon
GCGGACACCAGCTCCCTGAGTGGCGACAACACCCTCATGTCCACCCTGGAGGAGAAGGAGACAGACGGGGAGCAGGGCCCCGCAGCCTCCCCAGCCCCAGCTGATGAGCCCTCCAGCCCCCTGCTGTCCCCTGGCTGCACCTCCTCGTCCTCAGCTGCCAAGCTGCTATCCCCGCGGCGAACTGTGCCCCGGTCCCGGCTGGGTGGCAGAGGGCGGCCAGGCAGGGCTGGGGCTTTGCAGGCTGAGGCCGGCCCCTCAACTCACCCTCGGAGCTTGGAGGGGCTGCGGCTGCCCCCCGTGCCATGGAATGTGCCCCCAGATCTGAGCCCCAG
Seq C2 exon
GGTCGTAGATGGGATTGAGGACGGCTGTGGCTCCGACCAGCCCCAGTTCTCCTTCCGTGTGAGGCAGTCTGGCCCGGAATGTAGCAGCAGCCCTTCTCCTGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=1.000 C2=0.946
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=64.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCTGATCGGCTGTGAG
R:
CTGGTCCAGGAGAAGGGCTG
Band lengths:
320-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development