MmuEX6056366 @ mm9
Exon Skipping
Gene
ENSMUSG00000037579 | Kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:MGI Symbol;Acc:MGI:1341723]
Coordinates
chr15:99068506-99071424:+
Coord C1 exon
chr15:99068506-99068723
Coord A exon
chr15:99070026-99070357
Coord C2 exon
chr15:99071318-99071424
Length
332 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCCTTCTGTCCCTAGGTG
3' ss Score
15.27
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGAAGGGTGACCTGATCGGCTGCGAGCTGCCCCAGCGGGAACAAGTAGTGAAGGCCAATGCAGACGTGAAGGGGCTGACATACTGCGTCCTACAGTGTCTGCAGTTGGCTGGGCTGCATGAGAGCCTTGCTCTGTACCCTGAGTTTGCCCCACGCTTTAGCCGTGGCCTCCGAGGGGAGCTCAGCTACAACCTGGGAGCTGGTGGAGTCTCTGCGGAG
Seq A exon
GTGGATACCAGCTCCCTGAGTGGTGACAACACCCTCATGTCCACACTGGAGGAGAAGGAGACAGATGGGGAGCAGGGACACACGGTCTCACCAGCCCCAGCAGATGAGCCCTCCAGTCCCCTGCTGTCGCCCGGCTGTACCTCCTCCTCCTCAGCCGCCAAACTACTCTCCCCACGTCGAACTGCGCCTCGGCCGAGGTTGGGTGGCAGAGGGCGGCCAAGTAGGGCAGGGGTTTTGAAGCCTGAGGCTGGTCCTTCTGCTCATCCACGGTCACTTGATGGGCTGCAGCTACCCCCCATGCCATGGAATGTACCCCCAGACCTGAGCCCCAG
Seq C2 exon
GGTCGTAGATGGCATTGAAGATGGCTGCAGCTCTGACCAGCCCAAGTTCTCTTTCCGAGTGGGTCAGTCTGGCCCAGAATGTAGCAGCAGCCCCTCCCCAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037579-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.991 C2=0.946
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=64.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTGATCGGCTGCGA
R:
CTGTTCCTGGGGAGGGGC
Band lengths:
318-650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: